Paper List
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STAR-GO: Improving Protein Function Prediction by Learning to Hierarchically Integrate Ontology-Informed Semantic Embeddings
This paper addresses the core challenge of generalizing protein function prediction to unseen or newly introduced Gene Ontology (GO) terms by overcomi...
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Incorporating indel channels into average-case analysis of seed-chain-extend
This paper addresses the core pain point of bridging the theoretical gap for the widely used seed-chain-extend heuristic by providing the first rigoro...
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Competition, stability, and functionality in excitatory-inhibitory neural circuits
This paper addresses the core challenge of extending interpretable energy-based frameworks to biologically realistic asymmetric neural networks, where...
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Enhancing Clinical Note Generation with ICD-10, Clinical Ontology Knowledge Graphs, and Chain-of-Thought Prompting Using GPT-4
This paper addresses the core challenge of generating accurate and clinically relevant patient notes from sparse inputs (ICD codes and basic demograph...
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Learning From Limited Data and Feedback for Cell Culture Process Monitoring: A Comparative Study
This paper addresses the core challenge of developing accurate real-time bioprocess monitoring soft sensors under severe data constraints: limited his...
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Cell-cell communication inference and analysis: biological mechanisms, computational approaches, and future opportunities
This review addresses the critical need for a systematic framework to navigate the rapidly expanding landscape of computational methods for inferring ...
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Generating a Contact Matrix for Aged Care Settings in Australia: an agent-based model study
This study addresses the critical gap in understanding heterogeneous contact patterns within aged care facilities, where existing population-level con...
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Emergent Spatiotemporal Dynamics in Large-Scale Brain Networks with Next Generation Neural Mass Models
This work addresses the core challenge of understanding how complex, brain-wide spatiotemporal patterns emerge from the interaction of biophysically d...
Pulse desynchronization of neural populations by targeting the centroid of the limit cycle in phase space
University of Padua | Abdus Salam International Center for Theoretical Physics | Université Paris Dauphine-PSL
30秒速读
IN SHORT: This work addresses the core challenge of determining optimal pulse timing and intensity for desynchronizing pathological neural oscillations when the underlying dynamical system is unknown, by leveraging a robust geometric feature in phase space.
核心创新
- Methodology Introduces a pulse desynchronization control strategy based on targeting the geometric centroid of the limit cycle in phase space, a point shown to be robust to changes in the coupling constant (ε).
- Methodology Utilizes bivariate neural activity signals (e.g., X and Y averages) as feedback input, moving beyond traditional univariate approaches (like local field potential alone) to extract richer phase-space information.
- Theory Demonstrates analytically and numerically that the centroid lies within a region of maximal return times to the limit cycle after perturbation, making it an effective target for prolonging desynchronized states with minimal pulses.
主要结论
- Numerical simulations of a coupled FitzHugh-Nagumo system (N=1000) show the centroid's location is nearly independent of the coupling parameter ε (tested for ε ∈ {0.1, 0.2, 0.3, 0.4}), providing a robust target.
- The centroid is strategically located near the dx/dt=0 nullcline within the region of maximal return times (visualized via interpolated heatmaps), delaying the system's return to the synchronized limit cycle.
- The proposed control strategy, exploiting bivariate input and the centroid target, aims to achieve desynchronization with a significantly lower number of pulses compared to previous adaptive search methods, potentially reducing clinical side effects.
摘要: The synchronized activity of neuronal populations can lead to pathological over-synchronization in conditions such as epilepsy and Parkinson disease. Such states can be desynchronized by brief electrical pulses. But when the underlying oscillating system is not known, as in most practical applications, to determine the specific times and intensities of pulses used for desynchronizaton is a difficult inverse problem. Here we propose a desynchronization scheme for neuronal models of bi-variate neural activity, with possible applications in the medical setting. Our main argument is the existence of a peculiar point in the phase space of the system, the centroid, that is both easy to calculate and robust under changes in the coupling constant. This important target point can be used in a control procedure because it lies in the region of minimal return times of the system.