Paper List
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STAR-GO: Improving Protein Function Prediction by Learning to Hierarchically Integrate Ontology-Informed Semantic Embeddings
This paper addresses the core challenge of generalizing protein function prediction to unseen or newly introduced Gene Ontology (GO) terms by overcomi...
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Incorporating indel channels into average-case analysis of seed-chain-extend
This paper addresses the core pain point of bridging the theoretical gap for the widely used seed-chain-extend heuristic by providing the first rigoro...
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Competition, stability, and functionality in excitatory-inhibitory neural circuits
This paper addresses the core challenge of extending interpretable energy-based frameworks to biologically realistic asymmetric neural networks, where...
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Enhancing Clinical Note Generation with ICD-10, Clinical Ontology Knowledge Graphs, and Chain-of-Thought Prompting Using GPT-4
This paper addresses the core challenge of generating accurate and clinically relevant patient notes from sparse inputs (ICD codes and basic demograph...
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Learning From Limited Data and Feedback for Cell Culture Process Monitoring: A Comparative Study
This paper addresses the core challenge of developing accurate real-time bioprocess monitoring soft sensors under severe data constraints: limited his...
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Cell-cell communication inference and analysis: biological mechanisms, computational approaches, and future opportunities
This review addresses the critical need for a systematic framework to navigate the rapidly expanding landscape of computational methods for inferring ...
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Generating a Contact Matrix for Aged Care Settings in Australia: an agent-based model study
This study addresses the critical gap in understanding heterogeneous contact patterns within aged care facilities, where existing population-level con...
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Emergent Spatiotemporal Dynamics in Large-Scale Brain Networks with Next Generation Neural Mass Models
This work addresses the core challenge of understanding how complex, brain-wide spatiotemporal patterns emerge from the interaction of biophysically d...
Competition, stability, and functionality in excitatory-inhibitory neural circuits
Università degli Studi di Padova | University of California at San Diego | Rice University | University of California at Santa Barbara
30秒速读
IN SHORT: This paper addresses the core challenge of extending interpretable energy-based frameworks to biologically realistic asymmetric neural networks, where traditional symmetric weight assumptions break down.
核心创新
- Methodology Introduces a game-theoretic interpretation where each neuron acts as a selfish agent minimizing its own energy, with collective dynamics reaching Nash equilibria rather than global energy minima.
- Methodology Extends the proximal gradient dynamics framework to asymmetric firing rate networks, defining neuron-specific interaction costs {E_int^i(x,u_i)} and activation costs {E_act^i(x_i)}.
- Theory Bridges energy-based models with network stability theory (Lyapunov diagonal stability) to analyze regulation and balancing in excitatory-inhibitory circuits.
主要结论
- Asymmetric neural networks can be reformulated as noncooperative games where Nash equilibria correspond to stable network states, providing interpretability without global energy functions.
- The Wilson-Cowan model reveals that excitatory self-connection weight w_EE serves as a principal switch governing transitions between cooperative and antagonistic dynamical regimes.
- Lateral inhibition microcircuits function as contrast enhancers through hierarchical excitation-inhibition interplay, sharpening subtle environmental differences with arbitrary precision.
摘要: Energy-based models have become a central paradigm for understanding computation and stability in both theoretical neuroscience and machine learning. However, the energetic framework typically relies on symmetry in synaptic or weight matrices - a constraint that excludes biologically realistic systems such as excitatory–inhibitory (E–I) networks. When symmetry is relaxed, the classical notion of a global energy landscape fails, leaving the dynamics of asymmetric neural systems conceptually unanchored. In this work, we extend the energetic framework to asymmetric firing rate networks, revealing an underlying game-theoretic structure for the neural dynamics in which each neuron is an agent that seeks to minimize its own energy. In addition, we exploit rigorous stability principles from network theory to study regulation and balancing of neural activity in E-I networks. We combine the novel game-energetic interpretation and the stability results to revisit standard frameworks in theoretical neuroscience, such as the Wilson-Cowan and lateral inhibition models. These insights allow us to study cortical columns of lateral inhibition microcircuits as contrast enhancer - with the ability to selectively sharpen subtle differences in the environment through hierarchical excitation–inhibition interplay. Our results bridge energetic and game-theoretic views of neural computation, offering a pathway toward the systematic engineering of biologically grounded, dynamically stable neural architectures.