Structural Biology

Chart Builder (EMDB)

A user-driven visualization tool for the Electron Microscopy Data Bank, allowing custom chart generation

Key Feature: Real-time parameter dragging & custom SVG export

Structural Biology

Scop3PTM Next

Comprehensive display of protein post-translational modifications covering sequence, structure, and interactions

Key Feature: Synced switching between sequence, 3D structure, and network views

Structural Biology

Mol* (MolStar)

The industry-standard Web 3D molecular viewer adopted by PDB and other major databases

Key Feature: "MolViewStories" for creating interactive molecular narratives

Structural Biology

AlphaFold DB

Google DeepMind's database for predicted protein structures

Key Feature: Interactive PAE graphs that highlight prediction errors on the structure

Structural Biology

iCn3D

A purely WebGL-based web structure viewer supporting shareable interactive session links

Key Feature: One-click sharing of full interaction states via URL

Multi-omics & Data

OSDR Visualization

NASA Space Biology dataset visualization, including RadLab data for radiation studies

Key Feature: Cross-study comparison with interactive filtering and heatmaps

Multi-omics & Data

tidyheatmaps

An R package for gene expression heatmap visualization, simplifying multi-omics integration

Key Feature: Dynamic operations: interactive clustering, zooming, and subsetting

Multi-omics & Data

DataMap

Browser-based ShinyLive app for heatmaps, PCA, and t-SNE of high-dimensional omics data

Key Feature: Privacy-focused: runs entirely in-browser with real-time dimensionality reduction

Multi-omics & Data

Imageomics Catalog

AI-driven catalog containing code, datasets, and models (e.g., BioClip) for biology

Key Feature: Integrated interface to preview datasets and try AI models online

Single Cell & Genes

LoVis4u

Comparative genomics locus visualization tool tailored for phages and plasmids

Key Feature: Highly customizable annotation interactions and lossless zooming

Single Cell & Genes

CELLxGENE

Standardized dataset visualization platform hosting over 35 million cells

Key Feature: Real-time differential expression and annotation in the browser

Single Cell & Genes

Single Cell Portal

Open-access portal for storing and interactively exploring single-cell genomic data

Key Feature: Cloud-based visualization and subset analysis of large-scale matrices

Single Cell & Genes

3D Genome Browser

Platform for exploring chromatin interaction data (Hi-C) and 3D genomic structures

Key Feature: Virtual 4C: "Slice" the genome heatmap to view specific locus interactions

Clinical & Imaging

MultiverSeg

Multi-view interactive medical image segmentation tool with context guidance

Key Feature: Human-AI collaboration: Model updates instantly based on user clicks

Clinical & Imaging

Slideflow

Digital pathology AI tool for Whole Slide Image (WSI) processing and model development

Key Feature: Interactive slide viewer combined with real-time model inference heatmaps

Clinical & Imaging

Eaglescope

No-code interactive visualization and cohort selection for clinical/biomedical data

Key Feature: Generates clinical dashboards via config files without dedicated servers

Clinical & Imaging

PESSA

Tumor survival analysis tool based on pathway enrichment scores

Key Feature: Real-time K-M survival plot generation with custom gene set analysis

Systems & Neuro

Blue Brain BioExplorer

Neuroscience data visualization tool for extracting and analyzing large-scale scientific data

Key Feature: Immersive rendering: Parameter-driven fly-throughs of neural circuits

Systems & Neuro

Reactome

Interactive database of biological pathways and reactions

Key Feature: "Fireworks" view: Seamless zoom from macro pathways to molecular details

Systems & Neuro

ShinyGO

Accessible platform for Gene Ontology (GO) enrichment analysis and visualization

Key Feature: Automatically generates hierarchical clustering trees and PPI networks