Paper List
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Simulation and inference methods for non-Markovian stochastic biochemical reaction networks
This paper addresses the computational bottleneck of simulating and performing Bayesian inference for non-Markovian biochemical systems with history-d...
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Translating Measures onto Mechanisms: The Cognitive Relevance of Higher-Order Information
This review addresses the core challenge of translating abstract higher-order information theory metrics (e.g., synergy, redundancy) into defensible, ...
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Emergent Bayesian Behaviour and Optimal Cue Combination in LLMs
This paper addresses the critical gap in understanding whether LLMs spontaneously develop human-like Bayesian strategies for processing uncertain info...
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Vessel Network Topology in Molecular Communication: Insights from Experiments and Theory
This work addresses the critical lack of experimentally validated channel models for molecular communication within complex vessel networks, which is ...
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Modulation of DNA rheology by a transcription factor that forms aging microgels
This work addresses the fundamental question of how the transcription factor NANOG, essential for embryonic stem cell pluripotency, physically regulat...
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Imperfect molecular detection renormalizes apparent kinetic rates in stochastic gene regulatory networks
This paper addresses the core challenge of distinguishing genuine stochastic dynamics of gene regulatory networks from artifacts introduced by imperfe...
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Approximate Bayesian Inference on Mechanisms of Network Growth and Evolution
This paper addresses the core challenge of inferring the relative contributions of multiple, simultaneous generative mechanisms in network formation w...
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An AI Implementation Science Study to Improve Trustworthy Data in a Large Healthcare System
This paper addresses the critical gap between theoretical AI research and real-world clinical implementation by providing a practical framework for as...
Setting up for failure: automatic discovery of the neural mechanisms of cognitive errors
Department of Engineering, University of Cambridge | Department of Psychology, University of Cambridge | Department of Cognitive Science, Central European University
The 30-Second View
IN SHORT: This paper addresses the core challenge of automating the discovery of biologically plausible recurrent neural network (RNN) dynamics that can replicate the full richness of human and animal behavioral data, including characteristic errors and suboptimalities, rather than just optimal task performance.
Innovation (TL;DR)
- Methodology Introduces a novel diffusion model-based training objective for RNNs to capture complex, multimodal behavioral response distributions (e.g., from swap errors), moving beyond traditional moment-matching or simple loss functions like MSE.
- Methodology Proposes using a non-parametric generative model (Bayesian Non-parametric model of Swap errors, BNS) to create surrogate behavioral data for training, overcoming the data scarcity problem inherent in experimental neuroscience.
- Biology Demonstrates that RNNs trained to reproduce suboptimal behavior (swap errors) successfully recapitulate qualitative neural signatures (e.g., planar alignment of population activity) observed in macaque prefrontal cortex during visual working memory tasks, which task-optimal networks fail to capture.
Key conclusions
- RNNs trained with the novel diffusion-based method to reproduce probe-distance-dependent swap errors successfully matched the planar alignment geometry of neural population activity observed in macaque PFC (cosine similarity increase during cue period, as in Panichello et al., 2021), a signature not captured by task-optimal or no-swap-error models.
- The method accurately replicated target swap error rates as a function of distractor proximity (as defined by the generative BNS model), demonstrating quantitative fitting to complex behavioral distributions.
- The approach generated novel, testable hypotheses about the neural circuit mechanisms underlying swap errors (e.g., misselection at cue time), moving beyond descriptive population coding models.
Abstract: Discovering the neural mechanisms underpinning cognition is one of the grand challenges of neuroscience. However, previous approaches for building models of recurrent neural network (RNN) dynamics that explain behaviour required iterative refinement of architectures and/or optimization objectives, resulting in a piecemeal, and mostly heuristic, human-in-the-loop process. Here, we offer an alternative approach that automates the discovery of viable RNN mechanisms by explicitly training RNNs to reproduce behaviour, including the same characteristic errors and suboptimalities, that humans and animals produce in a cognitive task. Achieving this required two main innovations. First, as the amount of behavioural data that can be collected in experiments is often too limited to train RNNs, we use a non-parametric generative model of behavioural responses to produce surrogate data for training RNNs. Second, to capture all relevant statistical aspects of the data, rather than a limited number of hand-picked low-order moments as in previous moment-matching-based approaches, we developed a novel diffusion model-based approach for training RNNs. To showcase the potential of our approach, we chose a visual working memory task as our test-bed, as behaviour in this task is well known to produce response distributions that are patently multimodal (due to so-called swap errors). The resulting network dynamics correctly predicted previously reported qualitative features of neural data recorded in macaques. Importantly, these results were not possible to obtain with more traditional approaches, i.e., when only a limited set of behavioural signatures (rather than the full richness of behavioural response distributions) were fitted, or when RNNs were trained for task optimality (instead of reproducing behaviour). Our approach also yields novel predictions about the mechanism of swap errors, which can be readily tested in experiments. These results suggest that fitting RNNs to rich patterns of behaviour provides a powerful way to automatically discover the neural network dynamics supporting important cognitive functions.