Paper List
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GOPHER: Optimization-based Phenotype Randomization for Genome-Wide Association Studies with Differential Privacy
This paper addresses the core challenge of balancing rigorous privacy protection with data utility when releasing full GWAS summary statistics, overco...
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Real-time Cricket Sorting By Sex A low-cost embedded solution using YOLOv8 and Raspberry Pi
This paper addresses the critical bottleneck in industrial insect farming: the lack of automated, real-time sex sorting systems for Acheta domesticus ...
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Training Dynamics of Learning 3D-Rotational Equivariance
This work addresses the core dilemma of whether to use computationally expensive equivariant architectures or faster symmetry-agnostic models with dat...
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Fast and Accurate Node-Age Estimation Under Fossil Calibration Uncertainty Using the Adjusted Pairwise Likelihood
This paper addresses the dual challenge of computational inefficiency and sensitivity to fossil calibration errors in Bayesian divergence time estimat...
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Few-shot Protein Fitness Prediction via In-context Learning and Test-time Training
This paper addresses the core challenge of accurately predicting protein fitness with only a handful of experimental observations, where data collecti...
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scCluBench: Comprehensive Benchmarking of Clustering Algorithms for Single-Cell RNA Sequencing
This paper addresses the critical gap of fragmented and non-standardized benchmarking in single-cell RNA-seq clustering, which hinders objective compa...
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Simulation and inference methods for non-Markovian stochastic biochemical reaction networks
This paper addresses the computational bottleneck of simulating and performing Bayesian inference for non-Markovian biochemical systems with history-d...
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Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models
This paper addresses the core challenge of performing accurate Bayesian parameter inference for stochastic epidemic models when the likelihood functio...
Physics-Guided Surrogate Modeling for Machine Learning–Driven DLD Design Optimization
Department of Mechanical Engineering, Lehigh University | Computational Engineering Department, Lawrence Livermore National Laboratory | Department of Industrial and Production Engineering, Bangladesh University of Engineering and Technology | Precision Medicine Translational Research Center, West China Hospital, Sichuan University
30秒速读
IN SHORT: This paper addresses the core bottleneck of translating microfluidic DLD devices from research prototypes to clinical applications by replacing weeks-long empirical design cycles with a physics-guided machine learning framework that delivers fabrication-ready specifications in under 60 seconds.
核心创新
- Methodology First complete inverse design framework for DLD that transforms measured cellular deformability into optimized device geometry through physics-guided machine learning.
- Methodology Integration of high-fidelity Lattice-Boltzmann/Immersed-Boundary simulations with XGBoost surrogate models achieving sub-degree predictive accuracy (R²=0.9999, MSE=2×10⁻⁴).
- Methodology Statistical quantification of deformability-geometry interactions via Type II ANOVA revealing significant interaction effects (F=48.23, p<10⁻³⁴) despite geometric dominance of main effects.
主要结论
- Geometric parameters dominate migration angle variance (F=63.72, p<10⁻³⁷), but cellular deformability exerts statistically significant effects through interactions with device geometry (F=48.23, p<10⁻³⁴).
- The XGBoost surrogate model achieves exceptional predictive accuracy (R²=0.9999, MSE=2×10⁻⁴), enabling sub-degree migration angle prediction across the design space.
- Bayesian optimization via tree-structured Parzen estimation identifies optimal DLD architectures in under 60 seconds, reducing design iteration from weeks of experimental prototyping to minutes of automated computation.
摘要: Microfluidic separation technologies have transformed label-free cell sorting by exploiting intrinsic biophysical properties, yet the translation of these platforms from laboratory prototypes to clinical applications remains constrained by the empirical, trial-and-error nature of device design. Deterministic Lateral Displacement (DLD) represents a paradigmatic example: while demonstrating robust discrimination of cells by size, shape, and deformability across diverse applications including circulating tumor cell isolation and malaria diagnostics, DLD performance exhibits extreme sensitivity to the coupled interplay between cellular mechanical phenotype and micron-scale geometric parameters, necessitating iterative fabrication-testing cycles that span weeks to months. We present the first complete inverse design framework that transforms measured cellular deformability into fabrication-ready DLD specifications through physics-guided machine learning. Our approach integrates high-fidelity lattice-Boltzmann and immersed-boundary simulations with gradient-boosted surrogate models to systematically map cellular mechanical properties to migration behavior across manufacturing-feasible geometric configurations (pillar radius, gap, periodicity). Type II ANOVA quantifies the relative influence of these parameters, revealing that while geometric factors dominate migration angle variance (F=63.72, p<10−37), cellular deformability exerts statistically significant effects through interactions with device geometry (F=48.23, p<10−34). The resulting XGBoost surrogate achieves sub-degree predictive accuracy (R2=0.9999, MSE =2×10−4), enabling Bayesian optimization via tree-structured Parzen estimation to identify optimal array architectures in under 60 seconds—reducing design iteration from weeks of experimental prototyping to minutes of automated computation. By deploying this validated pipeline as an accessible web application that accepts experimentally measured deformation indices and returns optimized device specifications with tolerance analysis, we democratize DLD design for researchers without specialized computational expertise, thereby accelerating the translation of microfluidic technologies from research-grade prototypes to application-specific, clinically deployable devices.