Paper List
-
An AI Implementation Science Study to Improve Trustworthy Data in a Large Healthcare System
This paper addresses the critical gap between theoretical AI research and real-world clinical implementation by providing a practical framework for as...
-
The BEAT-CF Causal Model: A model for guiding the design of trials and observational analyses of cystic fibrosis exacerbations
This paper addresses the critical gap in cystic fibrosis exacerbation management by providing a formal causal framework that integrates expert knowled...
-
Hierarchical Molecular Language Models (HMLMs)
This paper addresses the core challenge of accurately modeling context-dependent signaling, pathway cross-talk, and temporal dynamics across multiple ...
-
Stability analysis of action potential generation using Markov models of voltage‑gated sodium channel isoforms
This work addresses the challenge of systematically characterizing how the high-dimensional parameter space of Markov models for different sodium chan...
-
Approximate Bayesian Inference on Mechanisms of Network Growth and Evolution
This paper addresses the core challenge of inferring the relative contributions of multiple, simultaneous generative mechanisms in network formation w...
-
EnzyCLIP: A Cross-Attention Dual Encoder Framework with Contrastive Learning for Predicting Enzyme Kinetic Constants
This paper addresses the core challenge of jointly predicting enzyme kinetic parameters (Kcat and Km) by modeling dynamic enzyme-substrate interaction...
-
Tissue stress measurements with Bayesian Inversion Stress Microscopy
This paper addresses the core challenge of measuring absolute, tissue-scale mechanical stress without making assumptions about tissue rheology, which ...
-
DeepFRI Demystified: Interpretability vs. Accuracy in AI Protein Function Prediction
This study addresses the critical gap between high predictive accuracy and biological interpretability in DeepFRI, revealing that the model often prio...
Linear Readout of Neural Manifolds with Continuous Variables
Department of Physics and Kempner Institute, Harvard University | Center for Computational Neuroscience, Flatiron Institute
30秒速读
IN SHORT: This paper addresses the core challenge of quantifying how the geometric structure of high-dimensional neural population activity (neural manifolds) determines the efficiency of linearly decoding continuous variables, amidst complex neural variability.
核心创新
- Theory Develops the first statistical-mechanical theory of 'regression capacity,' extending manifold capacity theory from discrete classification to continuous regression problems.
- Methodology Derives closed-form analytical formulas for regression capacity in synthetic models (e.g., spherical manifolds) and provides an instance-based estimator applicable to finite, real-world datasets.
- Biology Applies the framework to primate visual cortex data, quantitatively demonstrating a monotonic increase in linear decodability for object pose parameters (size, position) along the ventral stream (pixels → V4 → IT).
主要结论
- For synthetic spherical manifold models, regression capacity α decreases with increasing manifold dimensionality D and equivalent radius R_equiv (e.g., capacity drops as D increases for fixed R_equiv).
- In the mean-field model for point-like manifolds, capacity depends solely on the asymptotically equivalent tolerance ε_equiv = ε/(σ√(1-ρ)), where σ scales labels and ρ controls label correlations.
- Application to macaque ventral stream data shows regression capacity for object size and position increases (critical dimension N_crit decreases) from early (pixels) to late (IT) processing stages, indicating more efficient geometric organization for linear readout.
摘要: Brains and artificial neural networks compute with continuous variables such as object position or stimulus orientation. However, the complex variability in neural responses makes it difficult to link internal representational structure to task performance. We develop a statistical-mechanical theory of regression capacity that relates linear decoding efficiency of continuous variables to geometric properties of neural manifolds. Our theory handles complex neural variability and applies to real data, revealing increasing capacity for decoding object position and size along the monkey visual stream.