Paper List
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Macroscopic Dominance from Microscopic Extremes: Symmetry Breaking in Spatial Competition
This paper addresses the fundamental question of how microscopic stochastic advantages in spatial exploration translate into macroscopic resource domi...
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Linear Readout of Neural Manifolds with Continuous Variables
This paper addresses the core challenge of quantifying how the geometric structure of high-dimensional neural population activity (neural manifolds) d...
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Theory of Cell Body Lensing and Phototaxis Sign Reversal in “Eyeless” Mutants of Chlamydomonas
This paper solves the core puzzle of how eyeless mutants of Chlamydomonas exhibit reversed phototaxis by quantitatively modeling the competition betwe...
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Cross-Species Transfer Learning for Electrophysiology-to-Transcriptomics Mapping in Cortical GABAergic Interneurons
This paper addresses the challenge of predicting transcriptomic identity from electrophysiological recordings in human cortical interneurons, where li...
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Uncovering statistical structure in large-scale neural activity with Restricted Boltzmann Machines
This paper addresses the core challenge of modeling large-scale neural population activity (1500-2000 neurons) with interpretable higher-order interac...
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Realizing Common Random Numbers: Event-Keyed Hashing for Causally Valid Stochastic Models
This paper addresses the critical problem that standard stateful PRNG implementations in agent-based models violate causal validity by making random d...
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A Standardized Framework for Evaluating Gene Expression Generative Models
This paper addresses the critical lack of standardized evaluation protocols for single-cell gene expression generative models, where inconsistent metr...
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Single Molecule Localization Microscopy Challenge: A Biologically Inspired Benchmark for Long-Sequence Modeling
This paper addresses the core challenge of evaluating state-space models on biologically realistic, sparse, and stochastic temporal processes, which a...
A multiscale discrete-to-continuum framework for structured population models
Mathematical Institute, University of Oxford, OX2 6GG Oxford, UK | Ludwig Institute for Cancer Research, University of Oxford, OX3 7DQ Oxford, UK
30秒速读
IN SHORT: This paper addresses the core challenge of systematically deriving uniformly valid continuum approximations from discrete structured population models, overcoming ambiguities in truncation order and boundary conditions inherent in traditional Taylor expansion methods.
核心创新
- Methodology Introduces a discrete multiscale framework combining the method of multiple scales with matched asymptotic expansions to systematically derive continuum approximations, identifying regions where continuum representation is appropriate versus fundamentally discrete.
- Methodology Provides asymptotically consistent boundary conditions through discrete boundary layer analysis, resolving the ambiguity in boundary condition selection that plagues traditional Taylor expansion approaches.
- Methodology Demonstrates the framework on a lipid-structured model for early atherosclerosis, showing consistency between discrete and continuum descriptions and validating the method's practical applicability.
主要结论
- The method identifies distinct asymptotic regions: outer regions (e.g., O1-O4) describable by continuum PDEs (nonlinear advection equations) and inner boundary layers (e.g., IN1-IN5, B1-B4) that remain fundamentally discrete and require separate analysis.
- For the paradigm problem (Eq. 1), the framework yields a composite solution (Eq. 16) asymptotically consistent with the exact discrete steady state (Eq. 10), unlike the truncated PDE solution (Eq. 9) which predicts an incorrect decay rate (a/(εb) vs. log((2b+a)/(2b-a))/ε).
- The framework successfully derives a continuum approximation for a lipid-structured atherosclerosis model, verifying consistency and demonstrating transferability to biological systems with discrete internal states (e.g., lipid accumulation in macrophages).
摘要: Mathematical models of biological populations commonly use discrete structure classes to capture trait variation among individuals (e.g. age, size, phenotype, intracellular state). Upscaling these discrete models into continuum descriptions can improve analytical tractability and scalability of numerical solutions. Common upscaling approaches based solely on Taylor expansions may, however, introduce ambiguities in truncation order, uniform validity and boundary conditions. To address this, here we introduce a discrete multiscale framework to systematically derive continuum approximations of structured population models. Using the method of multiple scales and matched asymptotic expansions applied to discrete systems, we identify regions of structure space for which a continuum representation is appropriate and derive the corresponding partial differential equations. The leading-order dynamics are given by a nonlinear advection equation in the bulk domain and advection-diffusion processes in small inner layers about the leading wavefronts and stagnation point. We further derive discrete boundary layer descriptions for regions where a continuum representation is fundamentally inappropriate. Finally, we demonstrate the method on a simple lipid-structured model for early atherosclerosis and verify consistency between the discrete and continuum descriptions. The multiscale framework we present can be applied to other heterogeneous systems with discrete structure in order to obtain appropriate upscaled dynamics with asymptotically consistent boundary conditions.