Paper List
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An AI Implementation Science Study to Improve Trustworthy Data in a Large Healthcare System
This paper addresses the critical gap between theoretical AI research and real-world clinical implementation by providing a practical framework for as...
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The BEAT-CF Causal Model: A model for guiding the design of trials and observational analyses of cystic fibrosis exacerbations
This paper addresses the critical gap in cystic fibrosis exacerbation management by providing a formal causal framework that integrates expert knowled...
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Hierarchical Molecular Language Models (HMLMs)
This paper addresses the core challenge of accurately modeling context-dependent signaling, pathway cross-talk, and temporal dynamics across multiple ...
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Stability analysis of action potential generation using Markov models of voltage‑gated sodium channel isoforms
This work addresses the challenge of systematically characterizing how the high-dimensional parameter space of Markov models for different sodium chan...
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Approximate Bayesian Inference on Mechanisms of Network Growth and Evolution
This paper addresses the core challenge of inferring the relative contributions of multiple, simultaneous generative mechanisms in network formation w...
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EnzyCLIP: A Cross-Attention Dual Encoder Framework with Contrastive Learning for Predicting Enzyme Kinetic Constants
This paper addresses the core challenge of jointly predicting enzyme kinetic parameters (Kcat and Km) by modeling dynamic enzyme-substrate interaction...
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Tissue stress measurements with Bayesian Inversion Stress Microscopy
This paper addresses the core challenge of measuring absolute, tissue-scale mechanical stress without making assumptions about tissue rheology, which ...
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DeepFRI Demystified: Interpretability vs. Accuracy in AI Protein Function Prediction
This study addresses the critical gap between high predictive accuracy and biological interpretability in DeepFRI, revealing that the model often prio...
A mechanical bifurcation constrains the evolution of cell sheet folding in the family Volvocaceae
Département de Physique, École Normale Supérieure, Paris, France | Max Planck Institute for the Physics of Complex Systems, Dresden, Germany | Center for Systems Biology Dresden, Germany | Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
30秒速读
IN SHORT: This paper addresses the core problem of why there is an evolutionary gap in species with intermediate cell numbers (e.g., 256 cells) in Volvocaceae, linking it to a mechanical bifurcation that prevents simple inversion strategies beyond a critical size.
核心创新
- Methodology Developed a novel continuum elastic sheet model for cell sheet inversion, parameterizing cell shape changes as intrinsic curvature variations.
- Biology Identified and quantified a mechanical bifurcation (critical intrinsic curvature k1) that acts as a constraint, making inversion impossible for parameter sets extrapolated to 256+ cells.
- Theory Proposed that the evolution of complex inversion programs in Volvox (e.g., type-A/B) was a necessary adaptation to circumvent this fundamental physical constraint, linking developmental mechanics to evolutionary trajectories.
主要结论
- A mechanical bifurcation in the elastic sheet model defines a critical intrinsic curvature (k1); inversion is only possible for k > k1. Parameters for P. californica (k ≈ 2.5 ± 0.4) satisfy this.
- Allometric scaling (h ∝ N^{-1/4}, ξ ≈ 1.14 ± 0.06) and geometric extrapolation predict that for N ≥ 256 cells, the required parameters fall outside the inversion-possible regime (k < k1).
- The absence of species with ~256 cells and the evolution of complex inversion in Volvox are direct consequences of this bifurcation, demonstrating how physics can constrain evolutionary possibilities.
摘要: The processes of morphogenesis that give rise to the shapes of organs and organisms during development are often driven by mechanical instabilities. Can such mechanical bifurcations also drive or constrain the evolution of these processes in the first place? We discover an instance of these constraints in the green algae of the family Volvocaceae. During their development, their bowl-shaped embryonic cell sheet turns itself inside out. This inversion is driven by a simple wave of cell wedging in the genus Pleodorina (16–128 cells) and more complex programmes of cell shape changes in Volvox (∼400–50 000 cells). However, no species with intermediate cell numbers (256 cells) have been described. Here, we relate this gap to a mechanical bifurcation: Focusing on the inversion of Pleodorina californica (64 cells), we develop a continuum model, in which the cell shape changes driving inversion appear as changes of the intrinsic curvature of an elastic surface. A mechanical bifurcation in this model predicts that inversion is only possible in a subset of its parameter space. Strikingly, parameters estimated for P. californica fall into this possible subset, but those that we extrapolate to 256 or more cells using allometric observations and a model of cell cleavage in Volvocaceae do not. Our work thus suggests that the more complex inversion strategies of Volvox are an evolutionary necessity to obviate this bifurcation and indicates more broadly how mechanical bifurcations can drive the evolution of morphogenesis.