Paper List
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Macroscopic Dominance from Microscopic Extremes: Symmetry Breaking in Spatial Competition
This paper addresses the fundamental question of how microscopic stochastic advantages in spatial exploration translate into macroscopic resource domi...
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Linear Readout of Neural Manifolds with Continuous Variables
This paper addresses the core challenge of quantifying how the geometric structure of high-dimensional neural population activity (neural manifolds) d...
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Theory of Cell Body Lensing and Phototaxis Sign Reversal in “Eyeless” Mutants of Chlamydomonas
This paper solves the core puzzle of how eyeless mutants of Chlamydomonas exhibit reversed phototaxis by quantitatively modeling the competition betwe...
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Cross-Species Transfer Learning for Electrophysiology-to-Transcriptomics Mapping in Cortical GABAergic Interneurons
This paper addresses the challenge of predicting transcriptomic identity from electrophysiological recordings in human cortical interneurons, where li...
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Uncovering statistical structure in large-scale neural activity with Restricted Boltzmann Machines
This paper addresses the core challenge of modeling large-scale neural population activity (1500-2000 neurons) with interpretable higher-order interac...
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Realizing Common Random Numbers: Event-Keyed Hashing for Causally Valid Stochastic Models
This paper addresses the critical problem that standard stateful PRNG implementations in agent-based models violate causal validity by making random d...
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A Standardized Framework for Evaluating Gene Expression Generative Models
This paper addresses the critical lack of standardized evaluation protocols for single-cell gene expression generative models, where inconsistent metr...
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Single Molecule Localization Microscopy Challenge: A Biologically Inspired Benchmark for Long-Sequence Modeling
This paper addresses the core challenge of evaluating state-space models on biologically realistic, sparse, and stochastic temporal processes, which a...
A Unified Variational Principle for Branching Transport Networks: Wave Impedance, Viscous Flow, and Tissue Metabolism
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30秒速读
IN SHORT: This paper solves the core problem of predicting the empirically observed branching exponent (α≈2.7) in mammalian arterial trees, which neither Murray's cubic law (α=3) nor pure impedance matching (α≈2) can explain in isolation.
核心创新
- Methodology Introduces a unified network-level Lagrangian that combines dimensionless wave-reflection and metabolic transport penalties, eliminating the need for a free weighting parameter.
- Theory Formulates the morphological optimization as a zero-sum game and applies von Neumann's minimax theorem to derive a unique saddle point (α*, η*) from an equal-cost condition.
- Biology Derives binary branching (N=2) as a dynamic topological optimum that maximizes the network stiffness ratio κ_eff, rather than assuming it as an anatomical constraint.
主要结论
- The empirical branching exponent α_exp=2.70±0.20 emerges as a robust minimax optimum (α*=2.72 for G=11) between competing wave (α_w≈2.115) and transport (α_t∈[2.90,2.94]) attractors.
- The prediction is structurally robust, with sensitivity |Δα*|<0.01 across physiological parameter ranges, and depends critically only on the histological scaling exponent p=0.77.
- Binary branching (N=2) is uniquely selected as it maximizes the emergent network stiffness ratio κ_eff(N), a derived property of the unified framework.
摘要: The branching geometry of biological transport networks is canonically characterized by a diameter scaling exponent α. Traditionally, this exponent interpolates between two structural attractors: impedance matching (α∼2) for pulsatile wave propagation and viscous-metabolic minimization (α=3) for steady flow. We demonstrate that neither mechanism in isolation can predict the empirically observed αexp=2.70±0.20 in mammalian arterial trees. Incorporating the empirical sub-linear vessel-wall scaling h(r)∝r^p (p=0.77) into a three-term metabolic cost function rigorously breaks the universality of Murray’s cubic law — a consequence of cost-function inhomogeneity established via Cauchy’s functional equation — and bounds the static transport optimum to αt∈[2.90,2.94]. To account for the dynamic pulsatile environment, we formulate a unified network-level Lagrangian balancing wave-reflection penalties against steady transport-metabolic costs. Because the operational duty cycle η between pulsatile and steady states is inherently uncertain over developmental timescales, we cast the morphological optimization as a zero-sum game between network architecture and environmental state. By von Neumann’s minimax theorem — for which we provide a direct constructive proof exploiting the strict monotonicity of the cost curves — this game admits a unique saddle point (α∗,η∗) satisfying an exact equal-cost condition, from which the empirical exponent emerges as the robust optimal compromise between competing thermodynamic demands. We further prove that N=2 (binary branching) uniquely maximizes the network stiffness ratio κ_eff(N), establishing the universal preference for bifurcations not as an anatomical assumption but as a derived property of the unified wave-transport framework. Numerical evaluation on the porcine coronary tree (G=11 generations) yields α∗=2.72, in quantitative agreement with morphometric data. Sensitivity analysis confirms that this prediction is structurally robust to metabolic parameter variation (|Δα∗|<0.01 across the physiological range of viscosity and wall metabolic rates), depending critically only on the histological scaling exponent p — the single parameter with direct anatomical grounding. Specifically, the prediction is analytically insensitive to the exact value of the wall-thickness pre-factor c0, making the framework a zero-parameter derivation from fundamental scaling principles.