Paper List
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Nyxus: A Next Generation Image Feature Extraction Library for the Big Data and AI Era
This paper addresses the core pain point of efficiently extracting standardized, comparable features from massive (terabyte to petabyte-scale) biomedi...
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Topological Enhancement of Protein Kinetic Stability
This work addresses the long-standing puzzle of why knotted proteins exist by demonstrating that deep knots provide a functional advantage through enh...
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A Multi-Label Temporal Convolutional Framework for Transcription Factor Binding Characterization
This paper addresses the critical limitation of existing TF binding prediction methods that treat transcription factors as independent entities, faili...
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Social Distancing Equilibria in Games under Conventional SI Dynamics
This paper solves the core problem of proving the existence and uniqueness of Nash equilibria in finite-duration SI epidemic games, showing they are a...
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Binding Free Energies without Alchemy
This paper addresses the core bottleneck of computational expense in Absolute Binding Free Energy calculations by eliminating the need for numerous al...
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SHREC: A Spectral Embedding-Based Approach for Ab-Initio Reconstruction of Helical Molecules
This paper addresses the core bottleneck in cryo-EM helical reconstruction: eliminating the dependency on accurate initial symmetry parameter estimati...
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Budget-Sensitive Discovery Scoring: A Formally Verified Framework for Evaluating AI-Guided Scientific Selection
This paper addresses the critical gap in evaluating AI-guided scientific selection strategies under realistic budget constraints, where existing metri...
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Probabilistic Joint and Individual Variation Explained (ProJIVE) for Data Integration
This paper addresses the core challenge of accurately decomposing shared (joint) and dataset-specific (individual) sources of variation in multi-modal...
A Unified Variational Principle for Branching Transport Networks: Wave Impedance, Viscous Flow, and Tissue Metabolism
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30秒速读
IN SHORT: This paper solves the core problem of predicting the empirically observed branching exponent (α≈2.7) in mammalian arterial trees, which neither Murray's cubic law (α=3) nor pure impedance matching (α≈2) can explain in isolation.
核心创新
- Methodology Introduces a unified network-level Lagrangian that combines dimensionless wave-reflection and metabolic transport penalties, eliminating the need for a free weighting parameter.
- Theory Formulates the morphological optimization as a zero-sum game and applies von Neumann's minimax theorem to derive a unique saddle point (α*, η*) from an equal-cost condition.
- Biology Derives binary branching (N=2) as a dynamic topological optimum that maximizes the network stiffness ratio κ_eff, rather than assuming it as an anatomical constraint.
主要结论
- The empirical branching exponent α_exp=2.70±0.20 emerges as a robust minimax optimum (α*=2.72 for G=11) between competing wave (α_w≈2.115) and transport (α_t∈[2.90,2.94]) attractors.
- The prediction is structurally robust, with sensitivity |Δα*|<0.01 across physiological parameter ranges, and depends critically only on the histological scaling exponent p=0.77.
- Binary branching (N=2) is uniquely selected as it maximizes the emergent network stiffness ratio κ_eff(N), a derived property of the unified framework.
摘要: The branching geometry of biological transport networks is canonically characterized by a diameter scaling exponent α. Traditionally, this exponent interpolates between two structural attractors: impedance matching (α∼2) for pulsatile wave propagation and viscous-metabolic minimization (α=3) for steady flow. We demonstrate that neither mechanism in isolation can predict the empirically observed αexp=2.70±0.20 in mammalian arterial trees. Incorporating the empirical sub-linear vessel-wall scaling h(r)∝r^p (p=0.77) into a three-term metabolic cost function rigorously breaks the universality of Murray’s cubic law — a consequence of cost-function inhomogeneity established via Cauchy’s functional equation — and bounds the static transport optimum to αt∈[2.90,2.94]. To account for the dynamic pulsatile environment, we formulate a unified network-level Lagrangian balancing wave-reflection penalties against steady transport-metabolic costs. Because the operational duty cycle η between pulsatile and steady states is inherently uncertain over developmental timescales, we cast the morphological optimization as a zero-sum game between network architecture and environmental state. By von Neumann’s minimax theorem — for which we provide a direct constructive proof exploiting the strict monotonicity of the cost curves — this game admits a unique saddle point (α∗,η∗) satisfying an exact equal-cost condition, from which the empirical exponent emerges as the robust optimal compromise between competing thermodynamic demands. We further prove that N=2 (binary branching) uniquely maximizes the network stiffness ratio κ_eff(N), establishing the universal preference for bifurcations not as an anatomical assumption but as a derived property of the unified wave-transport framework. Numerical evaluation on the porcine coronary tree (G=11 generations) yields α∗=2.72, in quantitative agreement with morphometric data. Sensitivity analysis confirms that this prediction is structurally robust to metabolic parameter variation (|Δα∗|<0.01 across the physiological range of viscosity and wall metabolic rates), depending critically only on the histological scaling exponent p — the single parameter with direct anatomical grounding. Specifically, the prediction is analytically insensitive to the exact value of the wall-thickness pre-factor c0, making the framework a zero-parameter derivation from fundamental scaling principles.