Paper List
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An AI Implementation Science Study to Improve Trustworthy Data in a Large Healthcare System
This paper addresses the critical gap between theoretical AI research and real-world clinical implementation by providing a practical framework for as...
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The BEAT-CF Causal Model: A model for guiding the design of trials and observational analyses of cystic fibrosis exacerbations
This paper addresses the critical gap in cystic fibrosis exacerbation management by providing a formal causal framework that integrates expert knowled...
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Hierarchical Molecular Language Models (HMLMs)
This paper addresses the core challenge of accurately modeling context-dependent signaling, pathway cross-talk, and temporal dynamics across multiple ...
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Stability analysis of action potential generation using Markov models of voltage‑gated sodium channel isoforms
This work addresses the challenge of systematically characterizing how the high-dimensional parameter space of Markov models for different sodium chan...
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Approximate Bayesian Inference on Mechanisms of Network Growth and Evolution
This paper addresses the core challenge of inferring the relative contributions of multiple, simultaneous generative mechanisms in network formation w...
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EnzyCLIP: A Cross-Attention Dual Encoder Framework with Contrastive Learning for Predicting Enzyme Kinetic Constants
This paper addresses the core challenge of jointly predicting enzyme kinetic parameters (Kcat and Km) by modeling dynamic enzyme-substrate interaction...
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Tissue stress measurements with Bayesian Inversion Stress Microscopy
This paper addresses the core challenge of measuring absolute, tissue-scale mechanical stress without making assumptions about tissue rheology, which ...
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DeepFRI Demystified: Interpretability vs. Accuracy in AI Protein Function Prediction
This study addresses the critical gap between high predictive accuracy and biological interpretability in DeepFRI, revealing that the model often prio...
A Unified Variational Principle for Branching Transport Networks: Wave Impedance, Viscous Flow, and Tissue Metabolism
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30秒速读
IN SHORT: This paper solves the core problem of predicting the empirically observed branching exponent (α≈2.7) in mammalian arterial trees, which neither Murray's cubic law (α=3) nor pure impedance matching (α≈2) can explain in isolation.
核心创新
- Methodology Introduces a unified network-level Lagrangian that combines dimensionless wave-reflection and metabolic transport penalties, eliminating the need for a free weighting parameter.
- Theory Formulates the morphological optimization as a zero-sum game and applies von Neumann's minimax theorem to derive a unique saddle point (α*, η*) from an equal-cost condition.
- Biology Derives binary branching (N=2) as a dynamic topological optimum that maximizes the network stiffness ratio κ_eff, rather than assuming it as an anatomical constraint.
主要结论
- The empirical branching exponent α_exp=2.70±0.20 emerges as a robust minimax optimum (α*=2.72 for G=11) between competing wave (α_w≈2.115) and transport (α_t∈[2.90,2.94]) attractors.
- The prediction is structurally robust, with sensitivity |Δα*|<0.01 across physiological parameter ranges, and depends critically only on the histological scaling exponent p=0.77.
- Binary branching (N=2) is uniquely selected as it maximizes the emergent network stiffness ratio κ_eff(N), a derived property of the unified framework.
摘要: The branching geometry of biological transport networks is canonically characterized by a diameter scaling exponent α. Traditionally, this exponent interpolates between two structural attractors: impedance matching (α∼2) for pulsatile wave propagation and viscous-metabolic minimization (α=3) for steady flow. We demonstrate that neither mechanism in isolation can predict the empirically observed αexp=2.70±0.20 in mammalian arterial trees. Incorporating the empirical sub-linear vessel-wall scaling h(r)∝r^p (p=0.77) into a three-term metabolic cost function rigorously breaks the universality of Murray’s cubic law — a consequence of cost-function inhomogeneity established via Cauchy’s functional equation — and bounds the static transport optimum to αt∈[2.90,2.94]. To account for the dynamic pulsatile environment, we formulate a unified network-level Lagrangian balancing wave-reflection penalties against steady transport-metabolic costs. Because the operational duty cycle η between pulsatile and steady states is inherently uncertain over developmental timescales, we cast the morphological optimization as a zero-sum game between network architecture and environmental state. By von Neumann’s minimax theorem — for which we provide a direct constructive proof exploiting the strict monotonicity of the cost curves — this game admits a unique saddle point (α∗,η∗) satisfying an exact equal-cost condition, from which the empirical exponent emerges as the robust optimal compromise between competing thermodynamic demands. We further prove that N=2 (binary branching) uniquely maximizes the network stiffness ratio κ_eff(N), establishing the universal preference for bifurcations not as an anatomical assumption but as a derived property of the unified wave-transport framework. Numerical evaluation on the porcine coronary tree (G=11 generations) yields α∗=2.72, in quantitative agreement with morphometric data. Sensitivity analysis confirms that this prediction is structurally robust to metabolic parameter variation (|Δα∗|<0.01 across the physiological range of viscosity and wall metabolic rates), depending critically only on the histological scaling exponent p — the single parameter with direct anatomical grounding. Specifically, the prediction is analytically insensitive to the exact value of the wall-thickness pre-factor c0, making the framework a zero-parameter derivation from fundamental scaling principles.