Paper List
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Translating Measures onto Mechanisms: The Cognitive Relevance of Higher-Order Information
This review addresses the core challenge of translating abstract higher-order information theory metrics (e.g., synergy, redundancy) into defensible, ...
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Emergent Bayesian Behaviour and Optimal Cue Combination in LLMs
This paper addresses the critical gap in understanding whether LLMs spontaneously develop human-like Bayesian strategies for processing uncertain info...
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Vessel Network Topology in Molecular Communication: Insights from Experiments and Theory
This work addresses the critical lack of experimentally validated channel models for molecular communication within complex vessel networks, which is ...
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Modulation of DNA rheology by a transcription factor that forms aging microgels
This work addresses the fundamental question of how the transcription factor NANOG, essential for embryonic stem cell pluripotency, physically regulat...
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Imperfect molecular detection renormalizes apparent kinetic rates in stochastic gene regulatory networks
This paper addresses the core challenge of distinguishing genuine stochastic dynamics of gene regulatory networks from artifacts introduced by imperfe...
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PanFoMa: A Lightweight Foundation Model and Benchmark for Pan-Cancer
This paper addresses the dual challenge of achieving computational efficiency without sacrificing accuracy in whole-transcriptome single-cell represen...
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Beyond Bayesian Inference: The Correlation Integral Likelihood Framework and Gradient Flow Methods for Deterministic Sampling
This paper addresses the core challenge of calibrating complex biological models (e.g., PDEs, agent-based models) with incomplete, noisy, or heterogen...
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Contrastive Deep Learning for Variant Detection in Wastewater Genomic Sequencing
This paper addresses the core challenge of detecting viral variants in wastewater sequencing data without reference genomes or labeled annotations, ov...
A Unified Variational Principle for Branching Transport Networks: Wave Impedance, Viscous Flow, and Tissue Metabolism
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30秒速读
IN SHORT: This paper solves the core problem of predicting the empirically observed branching exponent (α≈2.7) in mammalian arterial trees, which neither Murray's cubic law (α=3) nor pure impedance matching (α≈2) can explain in isolation.
核心创新
- Methodology Introduces a unified network-level Lagrangian that combines dimensionless wave-reflection and metabolic transport penalties, eliminating the need for a free weighting parameter.
- Theory Formulates the morphological optimization as a zero-sum game and applies von Neumann's minimax theorem to derive a unique saddle point (α*, η*) from an equal-cost condition.
- Biology Derives binary branching (N=2) as a dynamic topological optimum that maximizes the network stiffness ratio κ_eff, rather than assuming it as an anatomical constraint.
主要结论
- The empirical branching exponent α_exp=2.70±0.20 emerges as a robust minimax optimum (α*=2.72 for G=11) between competing wave (α_w≈2.115) and transport (α_t∈[2.90,2.94]) attractors.
- The prediction is structurally robust, with sensitivity |Δα*|<0.01 across physiological parameter ranges, and depends critically only on the histological scaling exponent p=0.77.
- Binary branching (N=2) is uniquely selected as it maximizes the emergent network stiffness ratio κ_eff(N), a derived property of the unified framework.
摘要: The branching geometry of biological transport networks is canonically characterized by a diameter scaling exponent α. Traditionally, this exponent interpolates between two structural attractors: impedance matching (α∼2) for pulsatile wave propagation and viscous-metabolic minimization (α=3) for steady flow. We demonstrate that neither mechanism in isolation can predict the empirically observed αexp=2.70±0.20 in mammalian arterial trees. Incorporating the empirical sub-linear vessel-wall scaling h(r)∝r^p (p=0.77) into a three-term metabolic cost function rigorously breaks the universality of Murray’s cubic law — a consequence of cost-function inhomogeneity established via Cauchy’s functional equation — and bounds the static transport optimum to αt∈[2.90,2.94]. To account for the dynamic pulsatile environment, we formulate a unified network-level Lagrangian balancing wave-reflection penalties against steady transport-metabolic costs. Because the operational duty cycle η between pulsatile and steady states is inherently uncertain over developmental timescales, we cast the morphological optimization as a zero-sum game between network architecture and environmental state. By von Neumann’s minimax theorem — for which we provide a direct constructive proof exploiting the strict monotonicity of the cost curves — this game admits a unique saddle point (α∗,η∗) satisfying an exact equal-cost condition, from which the empirical exponent emerges as the robust optimal compromise between competing thermodynamic demands. We further prove that N=2 (binary branching) uniquely maximizes the network stiffness ratio κ_eff(N), establishing the universal preference for bifurcations not as an anatomical assumption but as a derived property of the unified wave-transport framework. Numerical evaluation on the porcine coronary tree (G=11 generations) yields α∗=2.72, in quantitative agreement with morphometric data. Sensitivity analysis confirms that this prediction is structurally robust to metabolic parameter variation (|Δα∗|<0.01 across the physiological range of viscosity and wall metabolic rates), depending critically only on the histological scaling exponent p — the single parameter with direct anatomical grounding. Specifically, the prediction is analytically insensitive to the exact value of the wall-thickness pre-factor c0, making the framework a zero-parameter derivation from fundamental scaling principles.