Paper List
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Discovery of a Hematopoietic Manifold in scGPT Yields a Method for Extracting Performant Algorithms from Biological Foundation Model Internals
This work addresses the core challenge of extracting reusable, interpretable, and high-performance biological algorithms from the opaque internal repr...
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MS2MetGAN: Latent-space adversarial training for metabolite–spectrum matching in MS/MS database search
This paper addresses the critical bottleneck in metabolite identification: the generation of high-quality negative training samples that are structura...
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Toward Robust, Reproducible, and Widely Accessible Intracranial Language Brain-Computer Interfaces: A Comprehensive Review of Neural Mechanisms, Hardware, Algorithms, Evaluation, Clinical Pathways and Future Directions
This review addresses the core challenge of fragmented and heterogeneous evidence that hinders the clinical translation of intracranial language BCIs,...
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Less Is More in Chemotherapy of Breast Cancer
通过纳入细胞周期时滞和竞争项,解决了现有肿瘤-免疫模型的过度简化问题,以定量比较化疗方案。
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Fold-CP: A Context Parallelism Framework for Biomolecular Modeling
This paper addresses the critical bottleneck of GPU memory limitations that restrict AlphaFold 3-like models to processing only a few thousand residue...
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Open Biomedical Knowledge Graphs at Scale: Construction, Federation, and AI Agent Access with Samyama Graph Database
This paper addresses the core pain point of fragmented biomedical data by constructing and federating large-scale, open knowledge graphs to enable sea...
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Predictive Analytics for Foot Ulcers Using Time-Series Temperature and Pressure Data
This paper addresses the critical need for continuous, real-time monitoring of diabetic foot health by developing an unsupervised anomaly detection fr...
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Hypothesis-Based Particle Detection for Accurate Nanoparticle Counting and Digital Diagnostics
This paper addresses the core challenge of achieving accurate, interpretable, and training-free nanoparticle counting in digital diagnostic assays, wh...
Countershading coloration in blue shark skin emerges from hierarchically organized and spatially tuned photonic architectures inside skin denticles
City University of Hong Kong | Max Planck Institute of Colloids and Interfaces | University of Salzburg | B CUBE – Center for Molecular Bioengineering | Elasmobranch Research Belgium (ERB) | Medical University Innsbruck | AZTI, Basque Research and Technology Alliance (BRTA) | Hong Kong Polytechnic University
30秒速读
IN SHORT: This paper solves the core problem of how blue sharks achieve their striking dorsoventral countershading camouflage, revealing that coloration originates not from dermal pigments but from hierarchical photonic architectures within individual skin denticles.
核心创新
- Biology Identifies denticles as the primary optical units ('pixels') for shark skin coloration, overturning the assumption that coloration originates from underlying dermal chromatophores.
- Methodology Establishes a multi-scale correlative imaging pipeline (optical, μCT, histology, FIB-SEM, TEM) to link nanoscale crystal organization with macroscopic color gradients.
- Biology Demonstrates a spatial gradient in photonic architecture: from ordered purine-crystal stacks (blue) to disordered assemblies (white), coupled with systematic changes in chromatophore composition and pulp cavity volume (25% in blue zone vs. 17% in white zone).
主要结论
- Blue shark countershading originates from denticle-embedded photonic architectures, not dermal pigments, with pulp cavity volume decreasing from 25% (blue) to 17% (white).
- Color variation is organized hierarchically: at the microscale, blue denticles contain a tessellated reflector-absorber system (iridophores + melanophores), while white denticles lack melanophores entirely.
- At the nanoscale, ordered purine-crystal stacks (~10-60 nm features) generate narrowband blue reflection, whereas disordered assemblies produce broadband white scattering, directly linking crystal organization to optical output.
摘要: The blue shark (Prionace glauca) exhibits a striking dorsoventral color gradient, transitioning from vibrant blue dorsally to silver and white ventrally—a pattern widely interpreted as pelagic countershading. Despite its ecological significance, the physical basis of this coloration remains unresolved. Here we show that this color system does not arise from dermal chromatophores, as in most vertebrates, but from a previously unrecognised photonic architecture housed within the pulp cavity of individual dermal denticles that cover the skin. Optical imaging reveals discrete color domains within denticle crowns, while external denticle morphology remains similar across color zones. Using spectroscopy, micro-computed tomography, histology and correlative electron microscopy, we demonstrate that color variation is organized across coupled micro- and nanoscale architectures. In blue denticles, iridophores and melanophores form a densely packed tessellated reflector–absorber system within an expanded crown-restricted pulp cavity. Transition-zone denticles exhibit partial cellular layering, whereas white denticles lack melanophores and contain only reflective cells. At the nanoscale, ordered purine-crystal stacks generate narrowband blue reflection, whereas disordered assemblies produce broadband white scattering. Together, these results reveal denticles as mechanically protected optical “pixels” whose hierarchical cellular and nanocrystal organization generates the shark’s countershaded coloration.