Paper List
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A Unified Variational Principle for Branching Transport Networks: Wave Impedance, Viscous Flow, and Tissue Metabolism
This paper solves the core problem of predicting the empirically observed branching exponent (α≈2.7) in mammalian arterial trees, which neither Murray...
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Household Bubbling Strategies for Epidemic Control and Social Connectivity
This paper addresses the core challenge of designing household merging (social bubble) strategies that effectively control epidemic risk while maximiz...
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Empowering Chemical Structures with Biological Insights for Scalable Phenotypic Virtual Screening
This paper addresses the core challenge of bridging the gap between scalable chemical structure screening and biologically informative but resource-in...
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A mechanical bifurcation constrains the evolution of cell sheet folding in the family Volvocaceae
This paper addresses the core problem of why there is an evolutionary gap in species with intermediate cell numbers (e.g., 256 cells) in Volvocaceae, ...
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Bayesian Inference in Epidemic Modelling: A Beginner’s Guide Illustrated with the SIR Model
This guide addresses the core challenge of estimating uncertain epidemiological parameters (like transmission and recovery rates) from noisy, real-wor...
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Geometric framework for biological evolution
This paper addresses the fundamental challenge of developing a coordinate-independent, geometric description of evolutionary dynamics that bridges gen...
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A multiscale discrete-to-continuum framework for structured population models
This paper addresses the core challenge of systematically deriving uniformly valid continuum approximations from discrete structured population models...
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Whole slide and microscopy image analysis with QuPath and OMERO
使QuPath能够直接分析存储在OMERO服务器中的图像而无需下载整个数据集,克服了大规模研究的本地存储限制。
Linear Readout of Neural Manifolds with Continuous Variables
Department of Physics and Kempner Institute, Harvard University | Center for Computational Neuroscience, Flatiron Institute
30秒速读
IN SHORT: This paper addresses the core challenge of quantifying how the geometric structure of high-dimensional neural population activity (neural manifolds) determines the efficiency of linearly decoding continuous variables, amidst complex neural variability.
核心创新
- Theory Develops the first statistical-mechanical theory of 'regression capacity,' extending manifold capacity theory from discrete classification to continuous regression problems.
- Methodology Derives closed-form analytical formulas for regression capacity in synthetic models (e.g., spherical manifolds) and provides an instance-based estimator applicable to finite, real-world datasets.
- Biology Applies the framework to primate visual cortex data, quantitatively demonstrating a monotonic increase in linear decodability for object pose parameters (size, position) along the ventral stream (pixels → V4 → IT).
主要结论
- For synthetic spherical manifold models, regression capacity α decreases with increasing manifold dimensionality D and equivalent radius R_equiv (e.g., capacity drops as D increases for fixed R_equiv).
- In the mean-field model for point-like manifolds, capacity depends solely on the asymptotically equivalent tolerance ε_equiv = ε/(σ√(1-ρ)), where σ scales labels and ρ controls label correlations.
- Application to macaque ventral stream data shows regression capacity for object size and position increases (critical dimension N_crit decreases) from early (pixels) to late (IT) processing stages, indicating more efficient geometric organization for linear readout.
摘要: Brains and artificial neural networks compute with continuous variables such as object position or stimulus orientation. However, the complex variability in neural responses makes it difficult to link internal representational structure to task performance. We develop a statistical-mechanical theory of regression capacity that relates linear decoding efficiency of continuous variables to geometric properties of neural manifolds. Our theory handles complex neural variability and applies to real data, revealing increasing capacity for decoding object position and size along the monkey visual stream.