Paper List
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Nyxus: A Next Generation Image Feature Extraction Library for the Big Data and AI Era
This paper addresses the core pain point of efficiently extracting standardized, comparable features from massive (terabyte to petabyte-scale) biomedi...
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Topological Enhancement of Protein Kinetic Stability
This work addresses the long-standing puzzle of why knotted proteins exist by demonstrating that deep knots provide a functional advantage through enh...
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A Multi-Label Temporal Convolutional Framework for Transcription Factor Binding Characterization
This paper addresses the critical limitation of existing TF binding prediction methods that treat transcription factors as independent entities, faili...
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Social Distancing Equilibria in Games under Conventional SI Dynamics
This paper solves the core problem of proving the existence and uniqueness of Nash equilibria in finite-duration SI epidemic games, showing they are a...
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Binding Free Energies without Alchemy
This paper addresses the core bottleneck of computational expense in Absolute Binding Free Energy calculations by eliminating the need for numerous al...
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SHREC: A Spectral Embedding-Based Approach for Ab-Initio Reconstruction of Helical Molecules
This paper addresses the core bottleneck in cryo-EM helical reconstruction: eliminating the dependency on accurate initial symmetry parameter estimati...
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Budget-Sensitive Discovery Scoring: A Formally Verified Framework for Evaluating AI-Guided Scientific Selection
This paper addresses the critical gap in evaluating AI-guided scientific selection strategies under realistic budget constraints, where existing metri...
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Probabilistic Joint and Individual Variation Explained (ProJIVE) for Data Integration
This paper addresses the core challenge of accurately decomposing shared (joint) and dataset-specific (individual) sources of variation in multi-modal...
Single-cell directional sensing at ultra-low chemoattractant concentrations from extreme first-passage events
University of Notre Dame | University of Utah
30秒速读
IN SHORT: This work addresses the core challenge of how a cell can rapidly and accurately determine the direction of a chemoattractant source when the signal is extremely weak (femto- to attomolar), and receptor binding events are discrete and rare.
核心创新
- Methodology Derives the first analytic expressions for the joint asymptotic distribution of the earliest k hitting times and their angular locations on a 2D circular cell, revealing that θ_k,N ~ N(θ_0, σ²_k,N) where σ²_k,N ∝ ( (R-1)² / (R W) ) * (1 + (2 log k)/(1+W) ) and W ~ log N.
- Theory Quantitatively demonstrates that early binding events (e.g., the first few arrivals) carry disproportionately more directional information than later arrivals, providing a theoretical basis for rapid cellular decision-making before a steady-state gradient is established.
- Methodology Proposes and rigorously analyzes the performance of several source-direction estimators (from simple averaging of early impact locations to more complex MLEs), deriving explicit formulas for their expected error and variance (e.g., E[ρ_k^res] ≈ (D/R)(b_N + a_N(log k - 1))).
主要结论
- The angular location θ_k of the k-th arriving molecule follows a normal distribution centered on the true source direction θ_0, with a variance that increases logarithmically with k (σ²_k,N ∝ log k), formally proving that earlier arrivals provide more precise directional cues.
- A simple estimator averaging the first k impact locations (n_res) can achieve accurate directional sensing with small k; its error grows with k while its variance decreases (Var[ρ_k^res] ≈ 4D²/(R²k)*((a_N log k + b_N - a_N)² + a_N²)), highlighting a trade-off.
- The theoretical framework successfully links key physical parameters (source distance R, initial molecule number N ~ 10³-10⁶, number of observed events k) to sensing performance, showing that accurate directional inference is possible even for R > 1 (source placed multiple cell radii away).
摘要: We investigate single-cell directional sensing from diffusing chemoattractant signals released by a localized source. We focus on the low-concentration regime in which receptor activity is discrete and cellular decisions are made on timescales far shorter than those required for steady-state concentration profiles or receptor occupancy to emerge. We derive analytic expressions for the joint distribution of receptor binding times and binding locations, conditional on the position of the source. We show that early binding events carry disproportionately more information about source directionality than later arrivals. Motivated by this observation, we propose and analyze several source-localization estimates that exploit early receptor binding statistics. Our results demonstrate that, even with a small number of binding events, cells possess sufficient information to rapidly and accurately infer the directionality of a diffusing chemoattractant source.