Paper List
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Nyxus: A Next Generation Image Feature Extraction Library for the Big Data and AI Era
This paper addresses the core pain point of efficiently extracting standardized, comparable features from massive (terabyte to petabyte-scale) biomedi...
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Topological Enhancement of Protein Kinetic Stability
This work addresses the long-standing puzzle of why knotted proteins exist by demonstrating that deep knots provide a functional advantage through enh...
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A Multi-Label Temporal Convolutional Framework for Transcription Factor Binding Characterization
This paper addresses the critical limitation of existing TF binding prediction methods that treat transcription factors as independent entities, faili...
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Social Distancing Equilibria in Games under Conventional SI Dynamics
This paper solves the core problem of proving the existence and uniqueness of Nash equilibria in finite-duration SI epidemic games, showing they are a...
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Binding Free Energies without Alchemy
This paper addresses the core bottleneck of computational expense in Absolute Binding Free Energy calculations by eliminating the need for numerous al...
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SHREC: A Spectral Embedding-Based Approach for Ab-Initio Reconstruction of Helical Molecules
This paper addresses the core bottleneck in cryo-EM helical reconstruction: eliminating the dependency on accurate initial symmetry parameter estimati...
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Budget-Sensitive Discovery Scoring: A Formally Verified Framework for Evaluating AI-Guided Scientific Selection
This paper addresses the critical gap in evaluating AI-guided scientific selection strategies under realistic budget constraints, where existing metri...
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Probabilistic Joint and Individual Variation Explained (ProJIVE) for Data Integration
This paper addresses the core challenge of accurately decomposing shared (joint) and dataset-specific (individual) sources of variation in multi-modal...
Physics-Guided Surrogate Modeling for Machine Learning–Driven DLD Design Optimization
Department of Mechanical Engineering, Lehigh University | Computational Engineering Department, Lawrence Livermore National Laboratory | Department of Industrial and Production Engineering, Bangladesh University of Engineering and Technology | Precision Medicine Translational Research Center, West China Hospital, Sichuan University
30秒速读
IN SHORT: This paper addresses the core bottleneck of translating microfluidic DLD devices from research prototypes to clinical applications by replacing weeks-long empirical design cycles with a physics-guided machine learning framework that delivers fabrication-ready specifications in under 60 seconds.
核心创新
- Methodology First complete inverse design framework for DLD that transforms measured cellular deformability into optimized device geometry through physics-guided machine learning.
- Methodology Integration of high-fidelity Lattice-Boltzmann/Immersed-Boundary simulations with XGBoost surrogate models achieving sub-degree predictive accuracy (R²=0.9999, MSE=2×10⁻⁴).
- Methodology Statistical quantification of deformability-geometry interactions via Type II ANOVA revealing significant interaction effects (F=48.23, p<10⁻³⁴) despite geometric dominance of main effects.
主要结论
- Geometric parameters dominate migration angle variance (F=63.72, p<10⁻³⁷), but cellular deformability exerts statistically significant effects through interactions with device geometry (F=48.23, p<10⁻³⁴).
- The XGBoost surrogate model achieves exceptional predictive accuracy (R²=0.9999, MSE=2×10⁻⁴), enabling sub-degree migration angle prediction across the design space.
- Bayesian optimization via tree-structured Parzen estimation identifies optimal DLD architectures in under 60 seconds, reducing design iteration from weeks of experimental prototyping to minutes of automated computation.
摘要: Microfluidic separation technologies have transformed label-free cell sorting by exploiting intrinsic biophysical properties, yet the translation of these platforms from laboratory prototypes to clinical applications remains constrained by the empirical, trial-and-error nature of device design. Deterministic Lateral Displacement (DLD) represents a paradigmatic example: while demonstrating robust discrimination of cells by size, shape, and deformability across diverse applications including circulating tumor cell isolation and malaria diagnostics, DLD performance exhibits extreme sensitivity to the coupled interplay between cellular mechanical phenotype and micron-scale geometric parameters, necessitating iterative fabrication-testing cycles that span weeks to months. We present the first complete inverse design framework that transforms measured cellular deformability into fabrication-ready DLD specifications through physics-guided machine learning. Our approach integrates high-fidelity lattice-Boltzmann and immersed-boundary simulations with gradient-boosted surrogate models to systematically map cellular mechanical properties to migration behavior across manufacturing-feasible geometric configurations (pillar radius, gap, periodicity). Type II ANOVA quantifies the relative influence of these parameters, revealing that while geometric factors dominate migration angle variance (F=63.72, p<10−37), cellular deformability exerts statistically significant effects through interactions with device geometry (F=48.23, p<10−34). The resulting XGBoost surrogate achieves sub-degree predictive accuracy (R2=0.9999, MSE =2×10−4), enabling Bayesian optimization via tree-structured Parzen estimation to identify optimal array architectures in under 60 seconds—reducing design iteration from weeks of experimental prototyping to minutes of automated computation. By deploying this validated pipeline as an accessible web application that accepts experimentally measured deformation indices and returns optimized device specifications with tolerance analysis, we democratize DLD design for researchers without specialized computational expertise, thereby accelerating the translation of microfluidic technologies from research-grade prototypes to application-specific, clinically deployable devices.