Paper List
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Exactly Solvable Population Model with Square-Root Growth Noise and Cell-Size Regulation
This paper addresses the fundamental gap in understanding how microscopic growth fluctuations, specifically those with size-dependent (square-root) no...
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Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models
This paper addresses the core challenge of performing accurate Bayesian parameter inference for stochastic epidemic models when the likelihood functio...
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Realistic Transition Paths for Large Biomolecular Systems: A Langevin Bridge Approach
This paper addresses the core challenge of generating physically realistic and computationally efficient transition paths between distinct protein con...
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MoRSAIK: Sequence Motif Reactor Simulation, Analysis and Inference Kit in Python
This work addresses the computational bottleneck in simulating prebiotic RNA reactor dynamics by developing a Python package that tracks sequence moti...
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The BEAT-CF Causal Model: A model for guiding the design of trials and observational analyses of cystic fibrosis exacerbations
This paper addresses the critical gap in cystic fibrosis exacerbation management by providing a formal causal framework that integrates expert knowled...
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A Theoretical Framework for the Formation of Large Animal Groups: Topological Coordination, Subgroup Merging, and Velocity Inheritance
This paper addresses the core problem of how large, coordinated animal groups form in nature, challenging the classical view of gradual aggregation by...
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ANNE Apnea Paper
This paper addresses the core challenge of achieving accurate, event-level sleep apnea detection and characterization using a non-intrusive, multimoda...
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DeeDeeExperiment: Building an infrastructure for integrating and managing omics data analysis results in R/Bioconductor
This paper addresses the critical bottleneck of managing and organizing the growing volume of differential expression and functional enrichment analys...
Competition, stability, and functionality in excitatory-inhibitory neural circuits
Università degli Studi di Padova | University of California at San Diego | Rice University | University of California at Santa Barbara
The 30-Second View
IN SHORT: This paper addresses the core challenge of extending interpretable energy-based frameworks to biologically realistic asymmetric neural networks, where traditional symmetric weight assumptions break down.
Innovation (TL;DR)
- Methodology Introduces a game-theoretic interpretation where each neuron acts as a selfish agent minimizing its own energy, with collective dynamics reaching Nash equilibria rather than global energy minima.
- Methodology Extends the proximal gradient dynamics framework to asymmetric firing rate networks, defining neuron-specific interaction costs {E_int^i(x,u_i)} and activation costs {E_act^i(x_i)}.
- Theory Bridges energy-based models with network stability theory (Lyapunov diagonal stability) to analyze regulation and balancing in excitatory-inhibitory circuits.
Key conclusions
- Asymmetric neural networks can be reformulated as noncooperative games where Nash equilibria correspond to stable network states, providing interpretability without global energy functions.
- The Wilson-Cowan model reveals that excitatory self-connection weight w_EE serves as a principal switch governing transitions between cooperative and antagonistic dynamical regimes.
- Lateral inhibition microcircuits function as contrast enhancers through hierarchical excitation-inhibition interplay, sharpening subtle environmental differences with arbitrary precision.
Abstract: Energy-based models have become a central paradigm for understanding computation and stability in both theoretical neuroscience and machine learning. However, the energetic framework typically relies on symmetry in synaptic or weight matrices - a constraint that excludes biologically realistic systems such as excitatory–inhibitory (E–I) networks. When symmetry is relaxed, the classical notion of a global energy landscape fails, leaving the dynamics of asymmetric neural systems conceptually unanchored. In this work, we extend the energetic framework to asymmetric firing rate networks, revealing an underlying game-theoretic structure for the neural dynamics in which each neuron is an agent that seeks to minimize its own energy. In addition, we exploit rigorous stability principles from network theory to study regulation and balancing of neural activity in E-I networks. We combine the novel game-energetic interpretation and the stability results to revisit standard frameworks in theoretical neuroscience, such as the Wilson-Cowan and lateral inhibition models. These insights allow us to study cortical columns of lateral inhibition microcircuits as contrast enhancer - with the ability to selectively sharpen subtle differences in the environment through hierarchical excitation–inhibition interplay. Our results bridge energetic and game-theoretic views of neural computation, offering a pathway toward the systematic engineering of biologically grounded, dynamically stable neural architectures.