Paper List
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Discovery of a Hematopoietic Manifold in scGPT Yields a Method for Extracting Performant Algorithms from Biological Foundation Model Internals
This work addresses the core challenge of extracting reusable, interpretable, and high-performance biological algorithms from the opaque internal repr...
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MS2MetGAN: Latent-space adversarial training for metabolite–spectrum matching in MS/MS database search
This paper addresses the critical bottleneck in metabolite identification: the generation of high-quality negative training samples that are structura...
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Toward Robust, Reproducible, and Widely Accessible Intracranial Language Brain-Computer Interfaces: A Comprehensive Review of Neural Mechanisms, Hardware, Algorithms, Evaluation, Clinical Pathways and Future Directions
This review addresses the core challenge of fragmented and heterogeneous evidence that hinders the clinical translation of intracranial language BCIs,...
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Less Is More in Chemotherapy of Breast Cancer
通过纳入细胞周期时滞和竞争项,解决了现有肿瘤-免疫模型的过度简化问题,以定量比较化疗方案。
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Fold-CP: A Context Parallelism Framework for Biomolecular Modeling
This paper addresses the critical bottleneck of GPU memory limitations that restrict AlphaFold 3-like models to processing only a few thousand residue...
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Open Biomedical Knowledge Graphs at Scale: Construction, Federation, and AI Agent Access with Samyama Graph Database
This paper addresses the core pain point of fragmented biomedical data by constructing and federating large-scale, open knowledge graphs to enable sea...
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Predictive Analytics for Foot Ulcers Using Time-Series Temperature and Pressure Data
This paper addresses the critical need for continuous, real-time monitoring of diabetic foot health by developing an unsupervised anomaly detection fr...
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Hypothesis-Based Particle Detection for Accurate Nanoparticle Counting and Digital Diagnostics
This paper addresses the core challenge of achieving accurate, interpretable, and training-free nanoparticle counting in digital diagnostic assays, wh...
Emergent Spatiotemporal Dynamics in Large-Scale Brain Networks with Next Generation Neural Mass Models
Universitat de les Illes Balears, Spain | Universitat Politècnica de Catalunya, Barcelona, Spain | Institut de Matemàtiques de la UPC - Barcelona Tech (IMTech), Barcelona, Spain | Centre de Recerca Matemàtica, Barcelona, Spain
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IN SHORT: This work addresses the core challenge of understanding how complex, brain-wide spatiotemporal patterns emerge from the interaction of biophysically detailed local dynamics and empirical anatomical connectivity.
核心创新
- Methodology Introduces a next-generation neural mass model (NG-NMM) into a large-scale brain network framework, providing a more biophysically grounded and analytically tractable description of population-level gamma oscillations via the PING mechanism.
- Methodology Applies the Master Stability Function (MSF) formalism and Floquet theory to systematically analyze transverse instabilities of homogeneous states (both fixed points and limit cycles) in a high-dimensional (90-node) network, linking instability modes to emergent spatiotemporal patterns.
- Biology Demonstrates that the network coupling in NG-NMMs enables cross-frequency coupling (CFC), specifically generating gamma oscillations whose amplitude is modulated by slower rhythms—a phenomenon not possible in isolated nodes and highly relevant for cognitive functions like memory.
主要结论
- NG-NMMs exhibit a broader dynamical repertoire than classical models, including regions of bistability, period-doubling cascades, and deterministic chaos within the homogeneous manifold (e.g., positive Lyapunov exponents for I_ext^E ~10-10.5 at ε=12).
- Anatomical connectivity is crucial for inducing cross-frequency coupling, allowing the emergence of gamma oscillations (27-170 Hz) with amplitude modulated by slower rhythms, a key feature of brain dynamics.
- The system's rich spatiotemporal patterns (traveling waves, high-dimensional chaos) arise from transverse instabilities of homogeneous solutions, analytically predicted by the MSF and confirmed via Lyapunov exponent and frequency spectrum analysis.
摘要: Understanding the dynamics of large-scale brain models remains a central challenge due to the inherent complexity of these systems. In this work, we explore the emergence of complex spatiotemporal patterns in a large scale-brain model composed of 90 interconnected brain regions coupled through empirically derived anatomical connectivity. An important aspect of our formulation is that the local dynamics of each brain region are described by a next-generation neural mass model, which explicitly captures the macroscopic gamma activity of coupled excitatory and inhibitory neural populations (PING mechanism). We first identify the system’s homogeneous states—both resting and oscillatory—and analyze their stability under uniform perturbations. Then, we determine the stability against non-uniform perturbations by obtaining dispersion relations for the perturbation growth rate. This analysis enables us to link unstable directions of the homogeneous solutions to the emergence of rich spatiotemporal patterns, that we characterize by means of Lyapunov exponents and frequency spectrum analysis. Our results show that, compared to previous studies with classical neural mass models, next-generation neural mass models provide a broader dynamical repertoire, both within homogeneous states and in the heterogeneous regime. Additionally, we identify a key role for anatomical connectivity in cross-frequency coupling, allowing for the emergence of gamma oscillations with amplitude modulated by slower rhythms. These findings suggest that such models are not only more biophysically grounded but also particularly well-suited to capture the full complexity of large-scale brain dynamics. Overall, our study advances the analytical understanding of emerging spatiotemporal patterns in whole-brain models.