Paper List
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Macroscopic Dominance from Microscopic Extremes: Symmetry Breaking in Spatial Competition
This paper addresses the fundamental question of how microscopic stochastic advantages in spatial exploration translate into macroscopic resource domi...
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Linear Readout of Neural Manifolds with Continuous Variables
This paper addresses the core challenge of quantifying how the geometric structure of high-dimensional neural population activity (neural manifolds) d...
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Theory of Cell Body Lensing and Phototaxis Sign Reversal in “Eyeless” Mutants of Chlamydomonas
This paper solves the core puzzle of how eyeless mutants of Chlamydomonas exhibit reversed phototaxis by quantitatively modeling the competition betwe...
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Cross-Species Transfer Learning for Electrophysiology-to-Transcriptomics Mapping in Cortical GABAergic Interneurons
This paper addresses the challenge of predicting transcriptomic identity from electrophysiological recordings in human cortical interneurons, where li...
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Uncovering statistical structure in large-scale neural activity with Restricted Boltzmann Machines
This paper addresses the core challenge of modeling large-scale neural population activity (1500-2000 neurons) with interpretable higher-order interac...
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Realizing Common Random Numbers: Event-Keyed Hashing for Causally Valid Stochastic Models
This paper addresses the critical problem that standard stateful PRNG implementations in agent-based models violate causal validity by making random d...
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A Standardized Framework for Evaluating Gene Expression Generative Models
This paper addresses the critical lack of standardized evaluation protocols for single-cell gene expression generative models, where inconsistent metr...
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Single Molecule Localization Microscopy Challenge: A Biologically Inspired Benchmark for Long-Sequence Modeling
This paper addresses the core challenge of evaluating state-space models on biologically realistic, sparse, and stochastic temporal processes, which a...
A mechanical bifurcation constrains the evolution of cell sheet folding in the family Volvocaceae
Département de Physique, École Normale Supérieure, Paris, France | Max Planck Institute for the Physics of Complex Systems, Dresden, Germany | Center for Systems Biology Dresden, Germany | Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
30秒速读
IN SHORT: This paper addresses the core problem of why there is an evolutionary gap in species with intermediate cell numbers (e.g., 256 cells) in Volvocaceae, linking it to a mechanical bifurcation that prevents simple inversion strategies beyond a critical size.
核心创新
- Methodology Developed a novel continuum elastic sheet model for cell sheet inversion, parameterizing cell shape changes as intrinsic curvature variations.
- Biology Identified and quantified a mechanical bifurcation (critical intrinsic curvature k1) that acts as a constraint, making inversion impossible for parameter sets extrapolated to 256+ cells.
- Theory Proposed that the evolution of complex inversion programs in Volvox (e.g., type-A/B) was a necessary adaptation to circumvent this fundamental physical constraint, linking developmental mechanics to evolutionary trajectories.
主要结论
- A mechanical bifurcation in the elastic sheet model defines a critical intrinsic curvature (k1); inversion is only possible for k > k1. Parameters for P. californica (k ≈ 2.5 ± 0.4) satisfy this.
- Allometric scaling (h ∝ N^{-1/4}, ξ ≈ 1.14 ± 0.06) and geometric extrapolation predict that for N ≥ 256 cells, the required parameters fall outside the inversion-possible regime (k < k1).
- The absence of species with ~256 cells and the evolution of complex inversion in Volvox are direct consequences of this bifurcation, demonstrating how physics can constrain evolutionary possibilities.
摘要: The processes of morphogenesis that give rise to the shapes of organs and organisms during development are often driven by mechanical instabilities. Can such mechanical bifurcations also drive or constrain the evolution of these processes in the first place? We discover an instance of these constraints in the green algae of the family Volvocaceae. During their development, their bowl-shaped embryonic cell sheet turns itself inside out. This inversion is driven by a simple wave of cell wedging in the genus Pleodorina (16–128 cells) and more complex programmes of cell shape changes in Volvox (∼400–50 000 cells). However, no species with intermediate cell numbers (256 cells) have been described. Here, we relate this gap to a mechanical bifurcation: Focusing on the inversion of Pleodorina californica (64 cells), we develop a continuum model, in which the cell shape changes driving inversion appear as changes of the intrinsic curvature of an elastic surface. A mechanical bifurcation in this model predicts that inversion is only possible in a subset of its parameter space. Strikingly, parameters estimated for P. californica fall into this possible subset, but those that we extrapolate to 256 or more cells using allometric observations and a model of cell cleavage in Volvocaceae do not. Our work thus suggests that the more complex inversion strategies of Volvox are an evolutionary necessity to obviate this bifurcation and indicates more broadly how mechanical bifurcations can drive the evolution of morphogenesis.