Paper List
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GOPHER: Optimization-based Phenotype Randomization for Genome-Wide Association Studies with Differential Privacy
This paper addresses the core challenge of balancing rigorous privacy protection with data utility when releasing full GWAS summary statistics, overco...
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Real-time Cricket Sorting By Sex A low-cost embedded solution using YOLOv8 and Raspberry Pi
This paper addresses the critical bottleneck in industrial insect farming: the lack of automated, real-time sex sorting systems for Acheta domesticus ...
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Training Dynamics of Learning 3D-Rotational Equivariance
This work addresses the core dilemma of whether to use computationally expensive equivariant architectures or faster symmetry-agnostic models with dat...
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Fast and Accurate Node-Age Estimation Under Fossil Calibration Uncertainty Using the Adjusted Pairwise Likelihood
This paper addresses the dual challenge of computational inefficiency and sensitivity to fossil calibration errors in Bayesian divergence time estimat...
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Few-shot Protein Fitness Prediction via In-context Learning and Test-time Training
This paper addresses the core challenge of accurately predicting protein fitness with only a handful of experimental observations, where data collecti...
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scCluBench: Comprehensive Benchmarking of Clustering Algorithms for Single-Cell RNA Sequencing
This paper addresses the critical gap of fragmented and non-standardized benchmarking in single-cell RNA-seq clustering, which hinders objective compa...
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Simulation and inference methods for non-Markovian stochastic biochemical reaction networks
This paper addresses the computational bottleneck of simulating and performing Bayesian inference for non-Markovian biochemical systems with history-d...
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Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models
This paper addresses the core challenge of performing accurate Bayesian parameter inference for stochastic epidemic models when the likelihood functio...
Linear Readout of Neural Manifolds with Continuous Variables
Department of Physics and Kempner Institute, Harvard University | Center for Computational Neuroscience, Flatiron Institute
30秒速读
IN SHORT: This paper addresses the core challenge of quantifying how the geometric structure of high-dimensional neural population activity (neural manifolds) determines the efficiency of linearly decoding continuous variables, amidst complex neural variability.
核心创新
- Theory Develops the first statistical-mechanical theory of 'regression capacity,' extending manifold capacity theory from discrete classification to continuous regression problems.
- Methodology Derives closed-form analytical formulas for regression capacity in synthetic models (e.g., spherical manifolds) and provides an instance-based estimator applicable to finite, real-world datasets.
- Biology Applies the framework to primate visual cortex data, quantitatively demonstrating a monotonic increase in linear decodability for object pose parameters (size, position) along the ventral stream (pixels → V4 → IT).
主要结论
- For synthetic spherical manifold models, regression capacity α decreases with increasing manifold dimensionality D and equivalent radius R_equiv (e.g., capacity drops as D increases for fixed R_equiv).
- In the mean-field model for point-like manifolds, capacity depends solely on the asymptotically equivalent tolerance ε_equiv = ε/(σ√(1-ρ)), where σ scales labels and ρ controls label correlations.
- Application to macaque ventral stream data shows regression capacity for object size and position increases (critical dimension N_crit decreases) from early (pixels) to late (IT) processing stages, indicating more efficient geometric organization for linear readout.
摘要: Brains and artificial neural networks compute with continuous variables such as object position or stimulus orientation. However, the complex variability in neural responses makes it difficult to link internal representational structure to task performance. We develop a statistical-mechanical theory of regression capacity that relates linear decoding efficiency of continuous variables to geometric properties of neural manifolds. Our theory handles complex neural variability and applies to real data, revealing increasing capacity for decoding object position and size along the monkey visual stream.