Paper List
-
Translating Measures onto Mechanisms: The Cognitive Relevance of Higher-Order Information
This review addresses the core challenge of translating abstract higher-order information theory metrics (e.g., synergy, redundancy) into defensible, ...
-
Emergent Bayesian Behaviour and Optimal Cue Combination in LLMs
This paper addresses the critical gap in understanding whether LLMs spontaneously develop human-like Bayesian strategies for processing uncertain info...
-
Vessel Network Topology in Molecular Communication: Insights from Experiments and Theory
This work addresses the critical lack of experimentally validated channel models for molecular communication within complex vessel networks, which is ...
-
Modulation of DNA rheology by a transcription factor that forms aging microgels
This work addresses the fundamental question of how the transcription factor NANOG, essential for embryonic stem cell pluripotency, physically regulat...
-
Imperfect molecular detection renormalizes apparent kinetic rates in stochastic gene regulatory networks
This paper addresses the core challenge of distinguishing genuine stochastic dynamics of gene regulatory networks from artifacts introduced by imperfe...
-
PanFoMa: A Lightweight Foundation Model and Benchmark for Pan-Cancer
This paper addresses the dual challenge of achieving computational efficiency without sacrificing accuracy in whole-transcriptome single-cell represen...
-
Beyond Bayesian Inference: The Correlation Integral Likelihood Framework and Gradient Flow Methods for Deterministic Sampling
This paper addresses the core challenge of calibrating complex biological models (e.g., PDEs, agent-based models) with incomplete, noisy, or heterogen...
-
Contrastive Deep Learning for Variant Detection in Wastewater Genomic Sequencing
This paper addresses the core challenge of detecting viral variants in wastewater sequencing data without reference genomes or labeled annotations, ov...
Single-cell directional sensing at ultra-low chemoattractant concentrations from extreme first-passage events
University of Notre Dame | University of Utah
30秒速读
IN SHORT: This work addresses the core challenge of how a cell can rapidly and accurately determine the direction of a chemoattractant source when the signal is extremely weak (femto- to attomolar), and receptor binding events are discrete and rare.
核心创新
- Methodology Derives the first analytic expressions for the joint asymptotic distribution of the earliest k hitting times and their angular locations on a 2D circular cell, revealing that θ_k,N ~ N(θ_0, σ²_k,N) where σ²_k,N ∝ ( (R-1)² / (R W) ) * (1 + (2 log k)/(1+W) ) and W ~ log N.
- Theory Quantitatively demonstrates that early binding events (e.g., the first few arrivals) carry disproportionately more directional information than later arrivals, providing a theoretical basis for rapid cellular decision-making before a steady-state gradient is established.
- Methodology Proposes and rigorously analyzes the performance of several source-direction estimators (from simple averaging of early impact locations to more complex MLEs), deriving explicit formulas for their expected error and variance (e.g., E[ρ_k^res] ≈ (D/R)(b_N + a_N(log k - 1))).
主要结论
- The angular location θ_k of the k-th arriving molecule follows a normal distribution centered on the true source direction θ_0, with a variance that increases logarithmically with k (σ²_k,N ∝ log k), formally proving that earlier arrivals provide more precise directional cues.
- A simple estimator averaging the first k impact locations (n_res) can achieve accurate directional sensing with small k; its error grows with k while its variance decreases (Var[ρ_k^res] ≈ 4D²/(R²k)*((a_N log k + b_N - a_N)² + a_N²)), highlighting a trade-off.
- The theoretical framework successfully links key physical parameters (source distance R, initial molecule number N ~ 10³-10⁶, number of observed events k) to sensing performance, showing that accurate directional inference is possible even for R > 1 (source placed multiple cell radii away).
摘要: We investigate single-cell directional sensing from diffusing chemoattractant signals released by a localized source. We focus on the low-concentration regime in which receptor activity is discrete and cellular decisions are made on timescales far shorter than those required for steady-state concentration profiles or receptor occupancy to emerge. We derive analytic expressions for the joint distribution of receptor binding times and binding locations, conditional on the position of the source. We show that early binding events carry disproportionately more information about source directionality than later arrivals. Motivated by this observation, we propose and analyze several source-localization estimates that exploit early receptor binding statistics. Our results demonstrate that, even with a small number of binding events, cells possess sufficient information to rapidly and accurately infer the directionality of a diffusing chemoattractant source.